EAGER: Scalable, Content-Based, Domain-Agnostic Search of Scientific Data through Concise Topological Representations

NSF-IIS 2136744

This project will develop approaches to measuring topological similarity that are smaller, faster, and more scalable than previously thought possible, with the goal of creating a method for content-based search of scientific data. Specifically, the investigators will develop a learned-hash function to convert a dataset’s persistence diagram - the common encoding of its topology - to binary code. This approach will allow topological similarity to be maintained when measured as the bitwise distance between codes, converting topological comparisons from an expensive bottleneck operation to one with nominal processing costs that can scale to large database enquiries. Initially, this project will focus on binary codes that maintain clusters and neighborhoods, with the goal of developing a fully domain-oblivious approach to content-based search.

Whole Slide Image Data Utilization Informed by Digital Diagnosis Patterns, K. Ashman, H. Zhuge, E. Shanley, S. Fox, S. Halat, A. Sholl, B. Summa, and J. Q. Brown, Journal of Pathology Informatics, Volume 13, 100113.

Open Access Paper

Deep Learning 2D and 3D Optical Sectioning Microscopy Using Cross-Modality Pix2Pix GAN Image Translation, H. Zhuge, B. Summa, J. Hamm, and J. Q. Brown, Biomedical Optics Express, 12 (12), pp. 7526-7543, 2021.

Open Access Paper Code and Data

Domain-Oblivious Approach for Learning Concise Representations of Filtered Topological Spaces for Clustering, Y. Qin, B. Terese Fasy, C. Wenk, and B. Summa, Transactions on Visualization and Computer Graphics, to appear (VIS 2021).

Website PDF arXiv Code and Data

Visualizing Topological Importance: A Class-Driven Approach, Y. Qin, B. T. Fasy, C. Wenk, B. Summa, In Proceedings of 2023 Topological Data Analysis and Visualization (TopoInVis), Pages: 93-103, 2023.

Website PDF Code and Data

Topological Guided Detection of Extreme Wind Phenomena: Implications for Wind Energy, Y. Qin, G. Johnson, B. Summa, In Proceedings of 2023 Workshop on Energy Data Visualization (EnergyVis), Pages: 16-20, 2023.

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Department of Computer Science, Tulane University, New Orleans, LA, USA