Publications

Rapid and Precise Topological Comparison with Merge Tree Neural Networks, Y. Qin, B.-T. Fasy, C. Wenk, and B. Summa, Transactions on Visualization and Computer Graphics, to appear (VIS 2024).

Whole Slide Image Data Utilization Informed by Digital Diagnosis Patterns, K. Ashman, H. Zhuge, E. Shanley, S. Fox, S. Halat, A. Sholl, B. Summa, and J. Q. Brown, Journal of Pathology Informatics, Volume 13, 100113.

Deep Learning 2D and 3D Optical Sectioning Microscopy Using Cross-Modality Pix2Pix GAN Image Translation, H. Zhuge, B. Summa, J. Hamm, and J. Q. Brown, Biomedical Optics Express, 12 (12), pp. 7526-7543, 2021.

Domain-Oblivious Approach for Learning Concise Representations of Filtered Topological Spaces for Clustering, Y. Qin, B. Terese Fasy, C. Wenk, and B. Summa, Transactions on Visualization and Computer Graphics (Proceedings IEEE VIS 2021), 28 (1), pp. 302-312, 2022.

Adaptive Compositing and Navigation of Variable Resolution Images, C. Licorish, N. Faraj, and B. Summa, Computer Graphics Forum, 40(1), pp. 138-150, 2021. (Eurographics 2021).

Efficient and Flexible Hierarchical Data Layouts for a Unified Encoding of Scalar Field Precision and Resolution, D. Hoang, B. Summa, P. Klacansky, W. Usher, H. Bhatia, P. Lindstrom, P.-T. Bremer, and V. Pascucci, IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE VIS 2020), 25 (1), pp. 603-613, 2021.

Persistence Atlas for Critical Point Variability in Ensembles, G. Favelier, N. Faraj, B. Summa, and J. Tierny, IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE VIS 2018), 25 (1), pp. 1152-1162, 2019.

Flexible Live-Wire: Image Segmentation with Floating Anchors,B. Summa, N. Faraj, C. Licorish, and V. Pascucci, Computer Graphics Forum (Proceedings of Eurographics 2018), 37(2), pp. 321-328, 2018.

Visualizing the Uncertainty of Graph-based 2D Segmentation with Min-path Stability, B. Summa, J. Tierny, and V. Pascucci, Computer Graphics Forum (Proceedings of Eurovis 2017), 36(3), pp. 133–143, 2017.

Grassmannian Atlas: A General Framework for Exploring Linear Projections of High-Dimensional Data, S. Liu, P.-T. Bremer, J. T. Jayaraman, B. Wang, B. Summa, and V. Pascucci, Computer Graphics Forum (Proceedings of Eurovis 2016), 35(3), pp. 1-10, 2016.

Paint and Click: Unified Interactions for Image Boundaries, B. Summa, A. A. Gooch, G. Scorzelli, and V. Pascucci, Computer Graphics Forum (Proceedings of Eurographics 2015), 34(2), pp. 385-393, 2015.

Distributed Seams for Gigapixel Panoramas, S. Philip, B. Summa, J. Tierny, P.-T. Bremer and V. Pascucci, IEEE Transactions on Visualization and Computer Graphics, 21 (3), 350-362.

ManyVis: Multiple Applications in an Integrated Visualization Environment, A. Rungta, B. Summa, D. Demir, P.-T. Bremer, V. Pascucci, IEEE Transactions on Visualization and Computer Graphics (Proceedings Scientific Visualization / Information Visualization 2013), 19 (12), 2878-2885.

Panorama Weaving: Fast and Flexible Seam Processing, B. Summa, J. Tierny and V. Pascucci, ACM Transactions on Graphics (TOG) Volume 31, Issue 4 (July 2012) Proceedings of ACM SIGGRAPH 2012, Article 83.

Branching and Circular Features in High Dimensional Data, B. Wang, B. Summa, V. Pascucci, M. Vejdemo-Johansson, IEEE Transactions on Visualization and Computer Graphics (Proceedings Scientific Visualization / Information Visualization 2011) 17, 12 (December 2011), 1902-1911.

Interactive Editing of Massive Imagery Made Simple: Turning Atlanta into Atlantis, B. Summa, G. Scorzelli, M. Jiang, P.-T. Bremer, V. Pascucci. ACM Transactions on Graphics (TOG), Volume 30, Issue 2 (April 2011), Article 7. Invited technical paper talk at SIGGRAPH 2011.

Streaming-Enabled Parallel Dataflow Architecture for Multicore Systems, H. Vo, D. Osmari, B. Summa, J. Comba, V. Pascucci and C. Silva, Computer Graphics Forum (Proceedings of IEEE/VGTC EuroVis 2010), 29(3), pp. 1073-1082, 2010.

Visualizing Topological Importance: A Class-Driven Approach, Y. Qin, B. T. Fasy, C. Wenk, B. Summa, In Proceedings of 2023 Topological Data Analysis and Visualization (TopoInVis), Pages: 93-103, 2023.

Topological Guided Detection of Extreme Wind Phenomena: Implications for Wind Energy, Y. Qin, G. Johnson, B. Summa, In Proceedings of 2023 Workshop on Energy Data Visualization (EnergyVis), Pages: 16-20, 2023.

Comparing Distance Metrics on Vectorized Persistence Summaries, B. Terese Fasy, Y. Qin, B. Summa, and C. Wenk, In NeurIPS 2020 Workshop on Topological Data Analysis and Beyond, 2020.

Assessment of sampling adequacy using persistent homology for the evaluation of heterogeneity in 3D histology acquired through inverted selective plane illumination microscopy (iSPIM), P. Lawson, B. Hu, B. Terese Fasy, B. Summa, C. Wenk, and J. Quincy Brown, In Proceedings of SPIE 11073, Clinical and Preclinical Optical Diagnostics II, 2019.

A Scalable Cyberinfrastructure for Interactive Visualization of Terascale Microscopy Data, A. Venkat, C. Christensen, A. Gyulassy, B. Summa, F. Federer, A. Angelucci, and V. Pascucci In proceedings of the New York Scientific Data Summit (NYSDS), New York, NY, August 2016, 1-7.

Scalable Seams for Gigapixel Panoramas, S. Philip, B. Summa, J. Tierny, P.-T. Bremer and V. Pascucci In Eurographics Symposium on Parallel Graphics and Visualization, May 2013, pp 25-32. Winner of Best Paper Award.

Hybrid CPU-GPU Solver for Gradient Domain Processing of Massive Images, S. Philip, B. Summa, P.-T. Bremer and V. Pascucci. In proceedings of the International Conference on Parallel and Distributed Systems 2011, pp 244-251.

Parallel Visualization on Large Clusters using MapReduce, H. T. Vo, J. Bronson, B. Summa, J. Comba, J. Freire, B. Howe, V. Pascucci, and C. Silva, IEEE Symposium on Large-Scale Data Analysis and Visualization, Providence, RI, USA, October 23-24, 2011.

PIDX: Efficient Parallel I/O for Multi-resolution Multi-dimensional Scientific Datasets, S. Kumar, V. Vishwanath, P. Carns, B. Summa, G. Scorzelli, V. Pascucci, R. Ross, J. Chen, H. Kolla, and R. Grout, IEEE Cluster 2011, Austin, TX, USA, September 26-30, 2011.

Massive Image Editing on the Cloud, B. Summa, H. T. Vo, C. Silva, and V. Pascucci, Proceedings of the IASTED International Conference on Computational Photography, Vancouver, BC, Canada, June 1–3, 2011.

Parallel Gradient Domain Processing of Massive Images, S. Phillip, B. Summa, P.-T. Bremer, V. Pascucci. in Eurographics Symposium on Parallel Graphics and Visualization, April 2011.

Multiscale 3-dimensional pathology findings of COVID-19 diseased lung using high-resolution cleared tissue microscopy, G. Li, S. E. Fox, B. Summa, C. Wenk, A. Akmatbekov, J. L. Harbert, R. S. Vander Heide, and J. Q. Brown, 2020.

Scalable Visualization and Interactive Analysis Using Massive Data Streams. V. Pascucci, P.-T. Bremer, A. Gyulassy, G. Scorzelli, C. Christensen, B. Summa, S. Kumar. Cloud Computing and Big Data, Advances in Parallel Computing, Volume 23, C. Catlett, W. Gentzsch, L. Grandinetti, G. Joubert, J. L. Vazquez-Poletti, Eds. IOS Press, 2013, pages 212-230.

Interactive Data Exploration. B. Summa, A. Gyulassy, P.-T. Bremer, V. Pascucci. In Data Intensive Science, T. Critchlow, K. Kleese van Dam, Eds. Chapman & Hall/CRC Computational Science, 2013, pages 351-382.

The ViSUS Visualization Framework. V. Pascucci, G. Scorzelli, B. Summa, P.-T. Bremer, A. Gyulassy, C. Christensen, S. Philip, and S. Kumar. In High Performance Visualization: Enabling Extreme-Scale Scientific Insight, E. W. Bethel, H. Childs, C. Hansen, Eds. Chapman & Hall/CRC Computational Science, 2012.

Towards Paint and Click: Unified Interactions for Image Boundaries, B. Summa, A. A. Gooch, G. Scorzelli, and V. Pascucci, SCI Technical Report, No. UUSCI-2014-004, SCI Institute, University of Utah, December, 2014.

Active Stitching: Beyond Batch Processing of Panoramas, B. Summa, J. Tierny, P.-T. Bremer, G. Scorzelli, and V. Pascucci, SCI Technical Report, SCI Institute, University of Utah, 2013.